Based on Medline abstracts till February 2008
Version 2.5alpha 2009-09-14
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Microarray data analysis
Manual
Microarray data enrichment analysis
Upload a set of Affymetrix gene identifiers (probe set IDs), separated by an enter
Or use one of the provided example gene sets below
(use only Affymetrix gene identifiers from one chip!)
Or upload (.txt) file:
Affymetrix microarray data of 7 days methapyrilene treated rats (
1
).
Affymetrix microarray data of 2,4-benzenetriol treated human peripheral blood mononuclear cells (PBMCs) (
2
).
Affymetrix array selection:
Human Genome U133A
Human Genome U133A 2.0 Array
Human Genome U133B
Human Genome U133 Plus 2.0 Array
Human Genome U95Av2 Array
Mouse Expression Array 430A
Mouse Expression Array 430A 2.0 Array
Mouse Expression Array 430B
Mouse Genome 430 2.0 Array
Murine Genome Array U74Av2
Murine Genome Array U74Bv2
Murine Genome Array U74Cv2
Rat Expression Array 230A
Rat Expression Array 230B
Rat Genome 230 2.0 Array
Rat Genome U34A
Rat Genome U34B
Rat Genome U34C
Options keyword enrichment calculator
Search category
Biological process
Drug
Pathway
Disease
Liver pathology
Minimal nr. of genes associated with keyword:
All
>=2
>=3
>=4
>=5
>=6
>=7
>=8
>=9
>=10
Minimal nr. of co-publications between gene and keyword:
All
>=2
>=3
>=4
>=5
>=6
>=7
>=8
>=9
>=10
>=15
R-scaled score* threshold:
All
>=20
>=25
>=30
>=35
>=40
>=45
>=50
>=55
>=60
>=65
>=70
Gene orthology selection:
Species-specific
Cross-species
Show p-values:
All
< 0.01
< 0.001
< 0.0001
< 0.00001
*Info on R-scaled score
Gene identifier type:
Affymetrix probe set identifiers
Entrez Gene identifiers
Ensembl gene identifiers
Analysis type:
Keyword enrichment calculator
Matrix generator